On a typical Unix system, you're prompted for a password whenever you run 'su' to get superuser privileges. On our cheap China-tabs, they include a simplistic version of 'su' that doesn't prompt or ask any questions. It just grants access to whatever requests them - possibly without your knowledge. This is clearly a security issue, so many people install the SuperUser app which comes with its own version of 'su'. That version sends a message to the app (.apk) which in turn pops up a window asking whether you want to grant app XYZ root access. Superuser.apk may improve security on your device but it doesn't add any new capabilities to a system that already has a copy of 'su'.
Some of the misunderstanding about Superuser.apk may be because most mainstream tabs and phones don't come with a stock 'su' binary. Users have to go to great lengths to get a copy installed - and the version they usually end up with is Superuser's. If they haven't used a Unix-based system before, they may incorrectly equate "root" with "popup". More experienced users understand that the popup is simply a substitute for a password prompt.
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